Knowledgebase and Forums/Tutorials and Reference Materials

How-To Videos

Stephen Wilson
posted this on April 06, 2010 01:05 PM

Below you'll find short videos about the IEDB that feature actual screen animations and voice overs from IEDB curators.  There are also recordings of the 2013 User Workshop presentations on the Analysis Resource.  These are longer in length.  Please note that the volume of the audio does fluctuate.  These videos are listed in the order they were presented on 2 October 2013.

Overview of the IEDB

Introduction to the IEDB site and Search Options

Simple Search Overview

Searching the IEDB

Simple Search: Finding Epitopes from a Protein

Using the Organism Finder

Peptide/Protein Homology Search

Linear Sequence Queries

Advanced Search Overview

Advanced B cell search: Example of finding antibody cross-reaction

How do I generate a list of all proteins from which epitopes have been identified for an organism of interest?

Using the Disease Finder

Understanding Query Results

Results: Epitope Listing, Details of Individual Entries and Using the Export Function

2013 User Workshop Analysis Resource Webinars

Overview of the epitope prediction and analysis tools available, presented by Dr. Bjoern Peters (22 minutes)

MHC class I binding prediction tools, presented by Dr. Yohan Kim (35 minutes)

MHC class II binding prediction tools and API, presented by Dr. Sinu Paul (49 minutes)

MHC class I processing and immunogenicity tools, presented by Dr. Bjoern Peters (23 minutes)

Analysis Tools (population coverage, epitope conservancy analysis, epitope cluster analysis), presented by Dr. Bjoern Peters (8 minutes)

B cell epitope prediction tools, presented by Dr. Julia Ponomarenko (56 minutes)

Homology mapping tools, presented by Dr. Julia Ponomarenko (9 minutes)

EpitopeViewer, presented by Dr. Julia Ponomarenko (8 minutes)