Knowledgebase and Forums/Tutorials and Reference Materials

How-To Videos

Stephen Wilson
posted this on April 06, 2010 01:05 PM

Below you'll find short videos about the IEDB that feature actual screen animations and voice overs from IEDB curators.  There are also recordings of the 2013 User Workshop presentations on the Analysis Resource.  These are longer in length.  Please note that the volume of the audio does fluctuate.  These videos are listed in the order they were presented on 2 October 2013.

Overview of the IEDB

Introduction to the IEDB site and Search Options

Simple Search Overview

Searching the IEDB

Simple Search: Finding Epitopes from a Protein

Using the Organism Finder

Peptide/Protein Homology Search

Linear Sequence Queries

Advanced Search Overview

Advanced B cell search: Example of finding antibody cross-reaction

How do I generate a list of all proteins from which epitopes have been identified for an organism of interest?

Using the Disease Finder

Understanding Query Results

Results: Epitope Listing, Details of Individual Entries and Using the Export Function

2014 User Workshop Webcasts

Overview of the IEDB resource, presented by Dr. Bjoern Peters (19 minutes)

IEDB data structure and curation, presented by Dr. Randi Vita (17 minutes)

Finding Data in IEDB 3.0, presented by Dr. Kerrie Vaughan and Nima Salimi (51 minutes)

The Immunome Browser, presented by Drs. Julia Ponomarenko and Kerrie Vaughan (40 minutes)

Query examples, presented by Dr. Kerrie Vaughan and Nima Salimi (28 minutes)

More query examples, presented by Dr. Kerrie Vaughan and Nima Salimi (86 minutes)

Help and support features; database export options, presented by Dr. Deborah Shackelford (25 minutes)

Introduction to the Analysis Resource, presented by Dr. Bjoern Peters (22 minutes)

MHC class I binding prediction tools, presented by Dr. Edita Karosiene (41 minutes)

MHC class II binding prediction tools and API, presented by Dr. Sinu Paul (50 minutes)

MHC class I processing and immunogenicity tools, presented by Dr. Bjoern Peters (27 minutes)

B cell epitope prediction tools, presented by Dr. Julia Ponomarenko (59 minutes)

Homology mapping tool and Epitope Viewer, presented by Dr. Julia Ponomarenko (23 minutes)

Prediction of ImmunolGlobulin Structure (PIGS), presented by Dr. Julia Ponomarenko (18 minutes)

Paratome (prediction of antigen binding regions of antibodies), Benchmark references and data sets, tools download, and how to contribute tools to the IEDB Analysis Resource, presented by Dr. Bjoern Peters (9 minutes)

 

 

 

 

 
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